Not seeing much you couldn’t do in Obsidian, et al. with plugins, but perhaps the value is in having it all set by default.

Personally, this is very close to how I use Obsidian. The only thing I’ve never done is flash cards, as I’m an auditory learner.

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I've been using Obsidian and plain text. Obsidian isn't open source but I was already using markdown for most of what I was writing so Obsidian just added quality of life to what I was already doing.