It’s your choice. You could receive a fedimint payment to your own federation, to your Lightning node, or you could swap from Lightning to base chain.
Why keep it in a fedimint?
You don’t have to manage a Lightning node.
You get more privacy than just using Lightning.
If you’re nontechnical, then a federation of trusted people can manage your keys for you (and potentially restore your access if you “forget your password”).
Like lightning, it will likely also be cheaper to use a fedimint than to transact on the base chain.