They will replace your engine at the dealership shop so yes.
But I don’t think the quality of the final product is the same with an engine assembled manually
Discussion
Mistakes happen.
People who buy expensive handmade cars might argue in your assembled manually point.
Toyota has replaced entire frames on older Tacomas way past warranty free of charge. They fixed a problem on our Toyota also way past warranty and not a recall either....dealer just let me know when we took it in for an emissions code that Toyota knew about this and were going good on it irregardless of mileage.