So, so many.
Cholera comes to mind (bacterial)
CJD (prion)
Various forms of mass hysteria (psychological)
Then there are weird edge cases like Rheumatoid Arthritis: epidemology and paleontology looks /exactly/ like a pathogen (inducing an autoimmune response to the tissues it hides among) except we've looked, a lot, and no microcritter has been convicted yet.