Wood is a mix of cellulose, hemicellulose, and lignin.

Cellulose is a linear polymer (chain) of glucose molecules. Its decomposition is a piece of cake compared to hemicellulose, which has ā€œjaggiesā€ sticking out on the sides of a chain. One might imagine something looking like the cutting chain on a chainsaw. It presents decomposer organisms added difficulty, but nothing like lignin.

Lignin is a decomposer’s worst nightmare. It’s not simple and straight. It’s not jagged and straight. Lignin is an autistic, nightmarish matrix of carbon rings bursting forth in every direction.

Need a resiliency mentor? Look no further. Most enzymes ā€œrecognizeā€ specific molecular shapes, lock on to them and start cutting. Not so with lignin. There is no specific shape to recognize, so enzymes are incompetent for the job.

It took white-rot fungi millions of years to figure out how to produce peroxidases. If you can’t cut it, burn it! A torrent of free radicals released from these peroxidases cracks open Lignin.

Once peroxidases became a tool in the utility belt of the mushroom, all bets were off and the face of the planet was forever changed.

#alexandria

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Loving all the fungi knowledge you’re sharing lately. Fascinating stuff.

Safe to assume something will evolve like this to deal with our industrial and consumer pollution? Maybe 2-3 million years from now the oceans will be plastic free?

Bacteria and fungi already have genes that code for things capable of degrading plastic and other industrial waste. It's just that it's a much tougher source of food to break open, and almost always requires more easily-digestible food in the environment to supplement and fuel extracellular digestion of the tougher stuff.

Saturated environments like those impose a big negative selection, so the locked up food source sits there for a while. But eventually someone will move in and make use of it, albeit very slowly. I stumbled upon a pile of old asphalt shingles in the woods many years ago. It appeared more degraded than from weathering alone so it became the basis for a research project later on. We found all sorts of microbes expressing all sorts of genes beyond the big family of peroxidases in order to eat break down the medium. Many of those genes are also involved in recycling celluloses/hemicelluloses/ligins.

I saw a talk this week from the U of Idaho on 3D printing with wood waste and bioresins. Crazy stuff and seems like a great waste building material if it can be commercialized

#scienstr

nerds.....

Can’t help it

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"I used to have to spend hours in the lab meticulously degrading that ā€˜nightmarish matrix’ of lignin and the side-chain tangles of hemicellulose just to isolate alpha-cellulose for dendrochronology isotope research. By treating wood shavings with acidified sodium chlorite and then bathing them in concentrated sodium hydroxide, I could dissolve away lignin’s randomly branching carbon rings and hemicellulose’s jagged side chains, repeating each step until only the pure, linear glucose polymer remained. That pristine alpha-cellulose was critical for accurate stable isotope measurements—stripping away everything else meant getting a more direct window into past climates recorded in the rings. After purification, I’d run Γ¹³C and Γ¹⁵N analyses with an EA-IRMS. And for Γ²H and Γ¹⁸O measurements with a TC-EA-IRMS. I even had to prepare nitrocellulose in the lab, ensuring each sample was fully converted so the hydrogen and oxygen isotopes could be precisely measured before exchanging with water in the ambient air...

Isolation protocols are tedious and generally suck for the tech. I feel your pain.