Is it possible to choose what version of core to run on the start9? Just the knots protocol, Because you still need to download the whole blockchain before you use knots. Asking for a friend.

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You can choose whether to run Core or Knots, and you can switch between them without needing to resync the chain. Hope that answers your question

I guess what I am asking is if I can choose what version to update to. The core node is just a client right? Maybe some backend work on the client to choose what version is the solution?

In the marketplace listing, you can click "versions" and select the version you want to install.